NumPy, short for Numerical Python, is an open source package for scientific computing and data analysis. NumPy serves as the foundation of Python’s scientific computing stack. Among the features of NumPy is ndarray, or N-dimensional array object, which is a flexible storage for data sets in Python. It also contains tools for integrating C/C++ and has capabilities for random number generation and Fourier transform.

 

NumPy is often preferred over regular Python lists for a variety of reasons. It is seen to be convenient, owing to its many free vector and matrix operations. Data structures in NumPy also takes up less space and performance in terms of speed is better, as well.

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    In this challenge you will develop an algorithm to estimate cortical thickness map from a raw T1-weighted image. Cortical thickness map is the thickness of the gray matter of the brain at every point. It is defined as the distance between the white matter surface and the pial surface. Your python script must output a 3d volume where every pixel NOT in the gray matter is assigned a value of zero, and every pixel in the gray matter is assigned the thickness value of the cortex at that point.

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