DNA Prefix Suffix Overlap "Shortest Super String" - 23/12/2017 12:47 EST

Take a look at the uploaded files. The excel file contain all the strings. You will start by 10 strings and solve it. Then continue up to 200 strings. Using TSP and Operation research methods. It is required that you use GAMS, for the heuristics you can use Excel VBA. There is a function attached with file, which you can use it for overlap to generate the distance matrix, as shown in the 10 & 20 strings sheet in excel file: Data-SSP-T171 And The VBA code is [login to view URL], also found with attachments. Further information can be found in the [login to view URL] documant